Prediction of human cDNA from its homologous mouse full-length cDNA and human shotgun database

An Integrated Database System for Full-Length Human cDNA in NEDO Full-Length Human cDNA Sequencing Project

Construction and Application of Mouse Full-length cDNA Database

Our group has been making effort to collect mouse full-length cDNA clones as large scale Mouse cDNA project. It is aiming at collecting all kind of expressed full-length Mouse cDNA clones. The first phase of the project is to make cataloged non-redundant cDNA clone bank. It is necessary for analysis of sequence data and further applications of cDNA clones. We sequence 3’-end part of all cDNA cl...

DBTSS : DataBase of Human Transcriptional Start Sites and Full-Length cDNA

Although a large number of new genes were predicted from the draft sequence of human genome, the need in cDNA analyses is still unchanged in order to locate correctly the position of genes and to examine their regulatory regions. First, correctly determined transcriptional start sites (TSS) position of a gene enables us to examine its regulatory region more precisely. It is reported that one ge...

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

The National Institutes of Health Mammalian Gene Collection (MGC) Program is a multiinstitutional effort to identify and sequence a cDNA clone containing a complete ORF for each human and mouse gene. ESTs were generated from libraries enriched for full-length cDNAs and analyzed to identify candidate full-ORF clones, which then were sequenced to high accuracy. The MGC has currently sequenced and...

An integrated analysis and database system for full-length cDNA.

Annotation and database system of full-length cDNA sequences was developed. As the components of the system, ORF annotation system, functional annotation system based on database search results, mapping annotation system, and integrated retrieval and display system were developed. In the ORF annotation system integrated analyses using conventional tools are performed and useful retrieval interf...